Variant DetailsVariant: dgv1086e212 Internal ID | 20149542 | Landmark | | Location Information | | Cytoband | 19q13.42 | Allele length | Assembly | Allele length | hg38 | 34977 | hg19 | 34977 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3583568, esv3583534 | Samples | 400101EH, 400626FC, 400121PL, 400843FL, 401968HL, 401813DN, 401608GE, 401829FJ, 400130HA | Known Genes | KIR2DS4, KIR3DL1, KIR3DL2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1086e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 9 | Observed Complex | 0 | Frequency | n/a |
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