A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv10549n54



Internal ID22778444
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:32551381..32811865hg38UCSC Ensembl
chr6:32519158..32779642hg19UCSC Ensembl
chr6:32627136..32887620hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38260485
hg19260485
hg18260485
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv602500, nsv602598, nsv602611, nsv602527, nsv602536, nsv602560, nsv602631, nsv602659, nsv602546, nsv602674, nsv602645
Samples
Known GenesHLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB6
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)dgv10549n54
Frequency
Sample Size17421
Observed Gain0
Observed Loss24
Observed Complex0
Frequencyn/a


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