A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv10453n54



Internal ID20143877
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:31387042..31493312hg38UCSC Ensembl
chr6:31354819..31461089hg19UCSC Ensembl
chr6:31462798..31569068hg18UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg38106271
hg19106271
hg18106271
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv601879, nsv601876, nsv601872, nsv601912, nsv601881, nsv601909, nsv601908, nsv601907, nsv601910, nsv601920, nsv601911, nsv601901, nsv601878, nsv601883, nsv601882, nsv601900, nsv601897, nsv601875, nsv601873, nsv601871, nsv601914, nsv601874, nsv601918, nsv601870, nsv601921, nsv601890, nsv601884, nsv601919, nsv601899, nsv601869, nsv601898, nsv601913, nsv601904
SamplesHGDP00120, HGDP01251, HGDP00739, HGDP00753, 1780862094_A, HGDP00832, HGDP00927, HGDP00110, HGDP00844, HGDP00945, HGDP01290, HGDP01212, HGDP01208, HGDP00920, HGDP00675, HGDP00878, HGDP00868, HGDP00876, HGDP01203, HGDP00852, 1780862101_A, HGDP01023, HGDP00733, HGDP00975, HGDP01237, HGDP01223, HGDP00830, HGDP00699, HGDP00771, HGDP01096, HGDP01250, HGDP00656, HGDP00445, HGDP01240, HGDP00847, HGDP00762, HGDP00689
Known GenesHCG26, HCP5, MICA
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)dgv10453n54
Frequency
Sample Size17421
Observed Gain0
Observed Loss141
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer